From 3aee2fd43e3059a699af2b63c6f2395e5a55e515 Mon Sep 17 00:00:00 2001 From: KatolaZ Date: Wed, 27 Sep 2017 15:06:31 +0100 Subject: First commit on github -- NetBunch 1.0 --- src/clust/Makefile.am | 6 + src/clust/Makefile.in | 588 ++++++++++++++++++++++++++++++++++++++++++++++++++ src/clust/clust.c | 162 ++++++++++++++ src/clust/clust_w.c | 161 ++++++++++++++ 4 files changed, 917 insertions(+) create mode 100644 src/clust/Makefile.am create mode 100644 src/clust/Makefile.in create mode 100644 src/clust/clust.c create mode 100644 src/clust/clust_w.c (limited to 'src/clust') diff --git a/src/clust/Makefile.am b/src/clust/Makefile.am new file mode 100644 index 0000000..676c6bf --- /dev/null +++ b/src/clust/Makefile.am @@ -0,0 +1,6 @@ +include ../common.mk +bin_PROGRAMS = clust clust_w +clust_SOURCES = clust.c ../utils/utils.c ../include/utils.h +clust_LDADD = -lm +clust_w_SOURCES = clust_w.c ../utils/utils.c ../include/utils.h +clust_w_LDADD = -lm diff --git a/src/clust/Makefile.in b/src/clust/Makefile.in new file mode 100644 index 0000000..3a891bb --- /dev/null +++ b/src/clust/Makefile.in @@ -0,0 +1,588 @@ +# Makefile.in generated by automake 1.15 from Makefile.am. +# @configure_input@ + +# Copyright (C) 1994-2014 Free Software Foundation, Inc. + +# This Makefile.in is free software; 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without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with this program. If not, see + * . + * + * (c) Vincenzo Nicosia 2009-2017 -- + * + * This file is part of NetBunch, a package for complex network + * analysis and modelling. For more information please visit: + * + * http://www.complex-networks.net/ + * + * If you use this software, please add a reference to + * + * V. Latora, V. Nicosia, G. Russo + * "Complex Networks: Principles, Methods and Applications" + * Cambridge University Press (2017) + * ISBN: 9781107103184 + * + *********************************************************************** + * + * This program computes the clustering coefficient of a graph and of + * each node. + * + * + */ + + +#include +#include +#include +#include "utils.h" + + +void usage(char *argv[]){ + + printf("********************************************************************\n" + "** **\n" + "** -*- clust -*- **\n" + "** **\n" + "** Compute the graph clustering coefficient and, optionally, **\n" + "** also the node clustering coefficient of all the nodes in **\n" + "** the graph 'graph_in'. **\n" + "** **\n" + "** The input file 'graph_in' is an edge-list: **\n" + "** **\n" + "** I_1 J_1 **\n" + "** I_2 J_2 **\n" + "** I_3 J_3 **\n" + "** ... ... **\n" + "** I_K J_K **\n" + "** **\n" + "** If 'graph_in' is equal to '-' (dash), read the file from **\n" + "** the standard input (STDIN). **\n" + "** **\n" + "** The output is a single line containing the value of the **\n" + "** graph clustering coefficient of 'graph_in'. **\n" + "** **\n" + "** If 'SHOW' is provided as second argument, the program **\n" + "** on the standard error (STDERR) the label, degree, and **\n" + "** node clustering coefficient of all the nodes of 'graph_in' **\n" + "** in the format: **\n" + "** **\n" + "** node_1 k_1 c_1 **\n" + "** node_2 k_2 c_2 **\n" + "** node_3 k_3 c_3 **\n" + "** node_4 k_4 c_4 **\n" + "** ..... **\n" + "** **\n" + "** where 'k_1' is the degree of 'node_1' and 'c_1' is its **\n" + "** node clustering coefficient. If a node has degree smaller **\n" + "** than 2, its clustering coefficient is equal to zero. **\n" + "** **\n" + "********************************************************************\n" + " This is Free Software - You can use and distribute it under \n" + " the terms of the GNU General Public License, version 3 or later\n\n" + " Please visit http://www.complex-networks.net for more information\n\n" + " (c) Vincenzo Nicosia 2009-2017 (v.nicosia@qmul.ac.uk)\n" + "********************************************************************\n\n" + ); + + printf("Usage: %s [SHOW]\n", argv[0]); +} + + + +double avg_clust(unsigned int *J_slap, unsigned int *r_slap, unsigned int N, int show){ + + double c = 0, ci=0; + unsigned int i, j, l, ki; + + for(i=0; i 1) + ci /= ki * (ki-1); + else + ci = 0; + if (show) + fprintf(stderr, "%d %d %g\n", i, ki, ci); + c += ci; + } + c /= N; + return c; +} + + + + +int main(int argc, char *argv[]){ + + unsigned int *J_slap=NULL, *r_slap=NULL; + unsigned int K, N; + FILE *filein; + double c; + int show = 0; + + if (argc < 2){ + usage(argv); + exit(1); + } + + if (argc >2 && !my_strcasecmp("SHOW", argv[2])){ + show = 1; + } + + if (!strcmp(argv[1], "-")){ + /* take the input from STDIN */ + filein = stdin; + } + else { + filein = openfile_or_exit(argv[1], "r", 2); + } + + read_slap(filein, &K, &N, &J_slap, &r_slap); + fclose(filein); + + c = avg_clust(J_slap, r_slap, N, show); + printf("%2.8lf\n", c); + free(J_slap); + free(r_slap); +} diff --git a/src/clust/clust_w.c b/src/clust/clust_w.c new file mode 100644 index 0000000..dcf14ed --- /dev/null +++ b/src/clust/clust_w.c @@ -0,0 +1,161 @@ +/** + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with this program. If not, see + * . + * + * (c) Vincenzo Nicosia 2009-2017 -- + * + * This file is part of NetBunch, a package for complex network + * analysis and modelling. For more information please visit: + * + * http://www.complex-networks.net/ + * + * If you use this software, please add a reference to + * + * V. Latora, V. Nicosia, G. Russo + * "Complex Networks: Principles, Methods and Applications" + * Cambridge University Press (2017) + * ISBN: 9781107103184 + * + *********************************************************************** + * + * This program computes the weighted clustering coefficient as + * defined in Barrat, Barthelemy, Pastor-Satorras, Vespignani, PNAS + * 101, 3747 (2004). + * + */ + +#include +#include +#include +#include "utils.h" + +void usage(char *argv[]){ + + printf("********************************************************************\n" + "** **\n" + "** -*- clust_w -*- **\n" + "** **\n" + "** Compute the weighted clustering coefficient of 'graph_in' **\n" + "** using the definition proposed by Barrayt, Barthelemy, **\n" + "** Pastor-Satorras and Vespignani. **\n" + "** **\n" + "** The input file 'graph_in' is an edge-list, in the format: **\n" + "** **\n" + "** I_1 J_1 W_1 **\n" + "** I_2 J_2 W_2 **\n" + "** **\n" + "** where W_i is the weight if the edge (I_i, J_i). **\n" + "** **\n" + "** If 'graph_in' is equal to '-' (dash), read the file from **\n" + "** the standard input (STDIN). **\n" + "** **\n" + "** The output is a single line containing the value of the **\n" + "** graph clustering coefficient of 'graph_in'. **\n" + "** **\n" + "** If 'SHOW' is provided as second argument, the program **\n" + "** on the standard error (STDERR) the label, degree, and **\n" + "** node clustering coefficient of all the nodes of 'graph_in' **\n" + "** in the format: **\n" + "** **\n" + "** node_1 k_1 c_1 **\n" + "** node_2 k_2 c_2 **\n" + "** node_3 k_3 c_3 **\n" + "** node_4 k_4 c_4 **\n" + "** ..... **\n" + "** **\n" + "** where 'k_1' is the degree of 'node_1' and 'c_1' is its **\n" + "** node clustering coefficient. If a node has degree smaller **\n" + "** than 2, its clustering coefficient is equal to zero. **\n" + "** **\n" + "********************************************************************\n" + " This is Free Software - You can use and distribute it under \n" + " the terms of the GNU General Public License, version 3 or later\n\n" + " Please visit http://www.complex-networks.net for more information\n\n" + " (c) Vincenzo Nicosia 2009-2017 (v.nicosia@qmul.ac.uk)\n" + "********************************************************************\n\n" + ); + + printf("Usage: %s [SHOW]\n", argv[0]); +} + + + + +double avg_clust_w(unsigned int *J_slap, unsigned int *r_slap, double *W_slap, + unsigned int N, int show){ + + double c = 0, ci=0, w=0.0; + unsigned int i, j, l, ki; + + for(i=0; i 0.0){ + ci += (W_slap[j] + w) / 2.0; + } + } + } + if(ki > 1) + ci /= strength(r_slap, W_slap, i) * (ki-1); + else + ci = 0; + if (show) + fprintf(stderr, "%d %d %0.14g\n", i, ki, ci); + c += ci; + } + c /= N; + return c; +} + + + + +int main(int argc, char *argv[]){ + + unsigned int *J_slap=NULL, *r_slap=NULL; + double *W_slap = NULL; + unsigned int K, N; + FILE *filein; + double c; + int show = 0; + + if (argc < 2){ + printf("Usage: %s [SHOW]\n", argv[0]); + exit(1); + } + if (argc >2 ){ + show = 1; + } + + if (!strcmp(argv[1], "-")){ + /* take the input from STDIN */ + filein = stdin; + } + else { + filein = openfile_or_exit(argv[1], "r", 2); + } + + + read_slap_w(filein, &K, &N, &J_slap, &r_slap, &W_slap); + fclose(filein); + c = avg_clust_w(J_slap, r_slap, W_slap, N, show); + printf("%2.8lf\n", c); + free(J_slap); + free(r_slap); + free(W_slap); +} -- cgit v1.2.3