diff options
| author | KatolaZ <katolaz@freaknet.org> | 2017-09-28 07:36:24 +0100 |
|---|---|---|
| committer | KatolaZ <katolaz@freaknet.org> | 2017-09-28 07:36:24 +0100 |
| commit | ff6073838e23eca46119cffac7855fddea3ef48f (patch) | |
| tree | c4a4b645d2d39d239bff75e6093507b42694c695 | |
| parent | bc509a2a17de7b853167a774fcf73ef0f345aa3d (diff) | |
Added "debian/" directory for deb packages
47 files changed, 268 insertions, 39 deletions
diff --git a/debian/README.Debian b/debian/README.Debian new file mode 100644 index 0000000..47131eb --- /dev/null +++ b/debian/README.Debian @@ -0,0 +1,18 @@ +netbunch for Debian/Devuan/Ubuntu +------------------ + +This is NetBunch, the collection of software for network analysis +accompanying the book: + + "Complex Networks: Principles, Methods and Application" + V. Latora, V. Nicosia, G. Russo, Cambridge University + Press (2017), ISBN: 9781107103184 + https://www.cambridge.org/9781107103184 + +NetBunch includes all the programs implementing the algorithms +described in the Appendices of the book, and several more. If you use +a program included in NetBunch, please add a citation to the textbook +above and to the relevant References indicated in the corresponding +source files. + + -- Vincenzo (KatolaZ) Nicosia <katolaz@freaknet.org> Thu, 28 Sep 2017 06:46:47 +0100 diff --git a/debian/README.source b/debian/README.source new file mode 100644 index 0000000..60c282a --- /dev/null +++ b/debian/README.source @@ -0,0 +1,51 @@ +===== NetBunch-1.0 ===== + +This is NetBunch, the collection of software for network analysis +accompanying the book: + + "Complex Networks: Principles, Methods and Application" + V. Latora, V. Nicosia, G. Russo, Cambridge University + Press (2017), ISBN: 9781107103184 + http://www.cambridge.org/gb/academic/subjects/physics/statistical-physics/complex-networks-principles-methods-and-applications?format=HB + +NetBunch includes all the programs implementing the algorithms +described in the Appendices of the book, and several more. If you use +a program included in NetBunch, please add a citation to the textbook +above and to the relevant References indicated in the corresponding +source files. + +See 'INSTALL' for information about downloading and installing +NetBunch. + +NetBunch is written and maintained by Vincenzo 'KatolaZ' Nicosia +(v.nicosia@qmul.ac.uk) (c) 2009-2017. + +The programs included in NetBunch can be used, modified, and redistributed +under the terms of the GNU General Public License, either version 3 of the +License or, at your option, any later version. + +NetBunch is distributed in the hope that it will be useful, but WITHOUT ANY +WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS +FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +details. + +See the file 'COPYING' for additional details. + + +===== DOCUMENTATION ===== + +The documentation of all the programs included in NetBunch is +available at the URL: + + http://www.complex-networks.net + +Moreover, all the manpages are available in HTML format in the folder +'netbunch-doc' of the binary distributions. + +If you compile NetBunch from sources, the HTML files will be put under +$(prefix)/netbunch-doc (default to /usr/local/netbunch-doc), while the +manpages will be installed under $(prefix)/share/man/man1 (default to +/usr/local/share/man/man1). + +All the documentation in NetBunch can be used and distributed +according to the terms the GNU Free Documentation License, version 1.3.
\ No newline at end of file diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..5ec9a50 --- /dev/null +++ b/debian/changelog @@ -0,0 +1,5 @@ +netbunch (1.0-1) unstable; urgency=medium + + * Initial release + + -- Vincenzo (KatolaZ) Nicosia <katolaz@freaknet.org> Thu, 28 Sep 2017 06:46:47 +0100 diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..ec63514 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +9 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..3fe75a8 --- /dev/null +++ b/debian/control @@ -0,0 +1,49 @@ +Source: netbunch +Section: science +Priority: optional +Maintainer: Vincenzo (KatolaZ) Nicosia <katolaz@freaknet.org> +Build-Depends: debhelper (>= 9), autotools-dev +Standards-Version: 3.9.8 +Homepage: http://www.complex-networks.net +Vcs-Git: https://github.com/KatolaZ/NetBunch/ +#Vcs-Browser: https://anonscm.debian.org/cgit/collab-maint/netbunch.git + +Package: netbunch +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: A collection of programs for complex networks analysis + NetBunch is a collection of command-line programs for complex + networks analysis, accompanying the textbook "Complex Networks: + Principles, Methods and Applications" by V. Latora, V. Nicosia, + G. Russo, Cambridge University Press (2017). + . + The suite includes programs to compute simple node and graph + properties, such as: + . + - connected components + - degrees and degree correlations + - node centrality + - paths and distances + - node and edge betweenness + - centrality + - clustering + - cycles + - motifs + - communities + - spanning trees + - ... + . + Moreover, NetBunch includes utilities to create synthetic + networks using different models, such as: + . + - Erdos-Renyi random graphs + - Configuration model + - Small-world model (Watts-Strogatz) + - Linear preferential attachment (Barabasi-Albert) + - Linear preferential attachment with tunable exponent + (Dorogovtsev-Mendes-Samukin) + - Fitness model (Bianconi-Barabasi) + - Hidden-variable model (Boguna and Pastor-Satorras) + - .... + + diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..847cc23 --- /dev/null +++ b/debian/copyright @@ -0,0 +1,46 @@ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: netbunch +Source: https://github.com/KatolaZ/NetBunch + +Files: * +Copyright: 2009-2017 Vincenzo 'KatolaZ' Nicosia <katolaz@freaknet.org> +License: GPL-3+ + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or (at + your option) any later version. + . + This program is distributed in the hope that it will be useful, but + WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>. + + +# If you want to use GPL v2 or later for the /debian/* files use +# the following clauses, or change it to suit. Delete these two lines +Files: debian/* +Copyright: 2017 Vincenzo (KatolaZ) Nicosia <katolaz@freaknet.org> +License: GPL-2+ + This package is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + . + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this program. If not, see <https://www.gnu.org/licenses/> + . + On Debian systems, the complete text of the GNU General + Public License version 2 can be found in "/usr/share/common-licenses/GPL-2". + +# Please also look if there are files or directories which have a +# different copyright/license attached and list them here. +# Please avoid picking licenses with terms that are more restrictive than the +# packaged work, as it may make Debian's contributions unacceptable upstream. diff --git a/debian/netbunch-docs.docs b/debian/netbunch-docs.docs new file mode 100644 index 0000000..efea0a6 --- /dev/null +++ b/debian/netbunch-docs.docs @@ -0,0 +1,2 @@ +README.Debian +README.source diff --git a/debian/patches/readme b/debian/patches/readme new file mode 100644 index 0000000..31c126f --- /dev/null +++ b/debian/patches/readme @@ -0,0 +1,30 @@ +Description: readme changed + netbunch (1.0-1) unstable; urgency=medium + . + * Initial release +Author: Vincenzo (KatolaZ) Nicosia <katolaz@freaknet.org> + +--- +The information above should follow the Patch Tagging Guidelines, please +checkout http://dep.debian.net/deps/dep3/ to learn about the format. Here +are templates for supplementary fields that you might want to add: + +Origin: <vendor|upstream|other>, <url of original patch> +Bug: <url in upstream bugtracker> +Bug-Debian: https://bugs.debian.org/<bugnumber> +Bug-Ubuntu: https://launchpad.net/bugs/<bugnumber> +Forwarded: <no|not-needed|url proving that it has been forwarded> +Reviewed-By: <name and email of someone who approved the patch> +Last-Update: 2017-09-28 + +--- netbunch-1.0.orig/README ++++ netbunch-1.0/README +@@ -6,7 +6,7 @@ accompanying the book: + "Complex Networks: Principles, Methods and Application" + V. Latora, V. Nicosia, G. Russo, Cambridge University + Press (2017), ISBN: 9781107103184 +- http://www.cambridge.org/gb/academic/subjects/physics/statistical-physics/complex-networks-principles-methods-and-applications?format=HB ++ https://www.cambridge.org/9781107103184 + + NetBunch includes all the programs implementing the algorithms + described in the Appendices of the book, and several more. If you use diff --git a/debian/patches/series b/debian/patches/series new file mode 100644 index 0000000..8178c76 --- /dev/null +++ b/debian/patches/series @@ -0,0 +1 @@ +readme diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..1b9aee5 --- /dev/null +++ b/debian/rules @@ -0,0 +1,25 @@ +#!/usr/bin/make -f +# See debhelper(7) (uncomment to enable) +# output every command that modifies files on the build system. +export DH_VERBOSE = 1 + + +# see FEATURE AREAS in dpkg-buildflags(1) +#export DEB_BUILD_MAINT_OPTIONS = hardening=+all + +# see ENVIRONMENT in dpkg-buildflags(1) +# package maintainers to append CFLAGS +#export DEB_CFLAGS_MAINT_APPEND = -Wall -pedantic +# package maintainers to append LDFLAGS +#export DEB_LDFLAGS_MAINT_APPEND = -Wl,--as-needed + + +%: + dh $@ --with autotools_dev + + +# dh_make generated override targets +# This is example for Cmake (See https://bugs.debian.org/641051 ) +#override_dh_auto_configure: +# dh_auto_configure -- # -DCMAKE_LIBRARY_PATH=$(DEB_HOST_MULTIARCH) + diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/doc/ba.1.html b/doc/ba.1.html index 37f6e97..3cb9b8c 100644 --- a/doc/ba.1.html +++ b/doc/ba.1.html @@ -121,7 +121,7 @@ file <code>ba_10000_3_5.txt</code> (thanks to the redirection operator <code>> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="bb_fitness.1.html">bb_fitness<span class="s">(1)</span></a>, <a class="man-ref" href="dms.1.html">dms<span class="s">(1)</span></a>, <a class="man-ref" href="bbv.1.html">bbv<span class="s">(1)</span></a></p> +<p><span class="man-ref">bb_fitness<span class="s">(1)</span></span>, <span class="man-ref">dms<span class="s">(1)</span></span>, <span class="man-ref">bbv<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/bb_fitness.1.html b/doc/bb_fitness.1.html index dbac594..ed7b162 100644 --- a/doc/bb_fitness.1.html +++ b/doc/bb_fitness.1.html @@ -137,7 +137,7 @@ specified file).</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="ba.1.html">ba<span class="s">(1)</span></a>, <a class="man-ref" href="dms.1.html">dms<span class="s">(1)</span></a></p> +<p><span class="man-ref">ba<span class="s">(1)</span></span>, <span class="man-ref">dms<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/bbv.1.html b/doc/bbv.1.html index 9fe7016..793ca0b 100644 --- a/doc/bbv.1.html +++ b/doc/bbv.1.html @@ -134,7 +134,7 @@ The final graph is saved in the file <code>bbv_10000_3_5_1.0_0.5.txt</code> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="ba.1.html">ba<span class="s">(1)</span></a>, <a class="man-ref" href="bb_fitness.1.html">bb_fitness<span class="s">(1)</span></a>, <a class="man-ref" href="dms.1.html">dms<span class="s">(1)</span></a></p> +<p><span class="man-ref">ba<span class="s">(1)</span></span>, <span class="man-ref">bb_fitness<span class="s">(1)</span></span>, <span class="man-ref">dms<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/bet_dependency.1.html b/doc/bet_dependency.1.html index e23f9d6..3e4322a 100644 --- a/doc/bet_dependency.1.html +++ b/doc/bet_dependency.1.html @@ -135,7 +135,7 @@ saved in the file <code>node_bet_dep</code>.</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="betweenness.1.html">betweenness<span class="s">(1)</span></a>, <a class="man-ref" href="shortest.1.html">shortest<span class="s">(1)</span></a></p> +<p><span class="man-ref">betweenness<span class="s">(1)</span></span>, <span class="man-ref">shortest<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/betweenness.1.html b/doc/betweenness.1.html index ab25a91..58afae2 100644 --- a/doc/betweenness.1.html +++ b/doc/betweenness.1.html @@ -158,7 +158,7 @@ while the values of edge betweenness are printed on STDOUT.</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="bet_dependency.1.html">bet_dependency<span class="s">(1)</span></a>, <a class="man-ref" href="shortest.1.html">shortest<span class="s">(1)</span></a></p> +<p><span class="man-ref">bet_dependency<span class="s">(1)</span></span>, <span class="man-ref">shortest<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/clust.1.html b/doc/clust.1.html index 63fd5e7..5a1af14 100644 --- a/doc/clust.1.html +++ b/doc/clust.1.html @@ -175,7 +175,7 @@ er_1000_5000.txt_node_clust</code>, which redirects the STDERR to the file <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="clust_w.1.html">clust_w<span class="s">(1)</span></a></p> +<p><span class="man-ref">clust_w<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/clust_w.1.html b/doc/clust_w.1.html index 49eceb6..5a33cda 100644 --- a/doc/clust_w.1.html +++ b/doc/clust_w.1.html @@ -170,7 +170,7 @@ coefficients are saved on the file <code>node_clust_w</code> (notice the syntax <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="clust.1.html">clust<span class="s">(1)</span></a></p> +<p><span class="man-ref">clust<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/cnm.1.html b/doc/cnm.1.html index f8aab58..61bb7e1 100644 --- a/doc/cnm.1.html +++ b/doc/cnm.1.html @@ -164,7 +164,7 @@ modularity at each step in the file <code>karate_cnm_trace</code>.</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="modularity.1.html">modularity<span class="s">(1)</span></a>, <a class="man-ref" href="gn.1.html">gn<span class="s">(1)</span></a>, <a class="man-ref" href="label_prop.1.html">label_prop<span class="s">(1)</span></a></p> +<p><span class="man-ref">modularity<span class="s">(1)</span></span>, <span class="man-ref">gn<span class="s">(1)</span></span>, <span class="man-ref">label_prop<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/components.1.html b/doc/components.1.html index 72db2f8..85b46b4 100644 --- a/doc/components.1.html +++ b/doc/components.1.html @@ -196,7 +196,7 @@ each connected component, we run:</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="strong_conn.1.html">strong_conn<span class="s">(1)</span></a>, <a class="man-ref" href="node_components.1.html">node_components<span class="s">(1)</span></a>, <a class="man-ref" href="largest_component.1.html">largest_component<span class="s">(1)</span></a></p> +<p><span class="man-ref">strong_conn<span class="s">(1)</span></span>, <span class="man-ref">node_components<span class="s">(1)</span></span>, <span class="man-ref">largest_component<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/conf_model_deg.1 b/doc/conf_model_deg.1 index 3a07489..a51d3d8 100644 --- a/doc/conf_model_deg.1 +++ b/doc/conf_model_deg.1 @@ -28,7 +28,7 @@ Optional number of edge stubs that are allowed to remain unmatched\. This is use \fBconf_model_deg\fR prints on output the edge list of the sampled graph, and reports on STDERR whether it has been able to find a graph\. . .SH "EXAMPLES" -Let us assume that the file \fBpl_\-3\.0_3_500_10000\fR contains a power\-law degree sequence (\'gamma=\-3\.0\', \'k_min=3\', \'k_max=500\', \'N=10000\'), for instance created using power_law(1) \fIpower_law\.1\.html\fR\. We can sample a simple configuration model graph having that degree sequence using: +Let us assume that the file \fBpl_\-3\.0_3_500_10000\fR contains a power\-law degree sequence (\'gamma=\-3\.0\', \'k_min=3\', \'k_max=500\', \'N=10000\'), for instance created using [power_law(1)][power_law(1)]\. We can sample a simple configuration model graph having that degree sequence using: . .IP "" 4 . diff --git a/doc/conf_model_deg.1.html b/doc/conf_model_deg.1.html index c70ebdf..54365a9 100644 --- a/doc/conf_model_deg.1.html +++ b/doc/conf_model_deg.1.html @@ -115,7 +115,7 @@ and reports on STDERR whether it has been able to find a graph.</p> <p>Let us assume that the file <code>pl_-3.0_3_500_10000</code> contains a power-law degree sequence ('gamma=-3.0', 'k_min=3', 'k_max=500', 'N=10000'), for -instance created using <a href="power_law.1.html">power_law(1)</a>. We can sample a +instance created using [<span class="man-ref">power_law<span class="s">(1)</span></span>][<span class="man-ref">power_law<span class="s">(1)</span></span>]. We can sample a simple configuration model graph having that degree sequence using:</p> <pre><code> $ conf_model_deg pl_-3.0_3_500_10000 > conf_model_-3.0_3_500_10000.net @@ -160,7 +160,7 @@ stubs will remain unmatched, meaning that the resulting graph has <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="deg_seq.1.html">deg_seq<span class="s">(1)</span></a>, <a class="man-ref" href="conf_model_deg_nocheck.1.html">conf_model_deg_nocheck<span class="s">(1)</span></a>, <a class="man-ref" href="power_law.1.html">power_law<span class="s">(1)</span></a>, <a class="man-ref" href="hv_net.1.html">hv_net<span class="s">(1)</span></a></p> +<p><span class="man-ref">deg_seq<span class="s">(1)</span></span>, <span class="man-ref">conf_model_deg_nocheck<span class="s">(1)</span></span>, <span class="man-ref">power_law<span class="s">(1)</span></span>, <span class="man-ref">hv_net<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/conf_model_deg_nocheck.1.html b/doc/conf_model_deg_nocheck.1.html index 5768cdb..3b3001f 100644 --- a/doc/conf_model_deg_nocheck.1.html +++ b/doc/conf_model_deg_nocheck.1.html @@ -122,7 +122,7 @@ always finds a multigraph:</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="conf_model_deg.1.html">conf_model_deg<span class="s">(1)</span></a>, <a class="man-ref" href="power_law.1.html">power_law<span class="s">(1)</span></a>, <a class="man-ref" href="hv_net.1.html">hv_net<span class="s">(1)</span></a></p> +<p><span class="man-ref">conf_model_deg<span class="s">(1)</span></span>, <span class="man-ref">power_law<span class="s">(1)</span></span>, <span class="man-ref">hv_net<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/deg_seq.1.html b/doc/deg_seq.1.html index a38cd4e..5726029 100644 --- a/doc/deg_seq.1.html +++ b/doc/deg_seq.1.html @@ -111,7 +111,7 @@ format:</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="deg_seq_w.1.html">deg_seq_w<span class="s">(1)</span></a>, <a class="man-ref" href="conf_model_deg.1.html">conf_model_deg<span class="s">(1)</span></a>, <a class="man-ref" href="fitmle.1.html">fitmle<span class="s">(1)</span></a>, <a class="man-ref" href="power_law.1.html">power_law<span class="s">(1)</span></a></p> +<p><span class="man-ref">deg_seq_w<span class="s">(1)</span></span>, <span class="man-ref">conf_model_deg<span class="s">(1)</span></span>, <span class="man-ref">fitmle<span class="s">(1)</span></span>, <span class="man-ref">power_law<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/deg_seq_w.1.html b/doc/deg_seq_w.1.html index fed3819..46eb69a 100644 --- a/doc/deg_seq_w.1.html +++ b/doc/deg_seq_w.1.html @@ -111,7 +111,7 @@ <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="deg_seq.1.html">deg_seq<span class="s">(1)</span></a>, <a class="man-ref" href="conf_model_deg.1.html">conf_model_deg<span class="s">(1)</span></a>, <a class="man-ref" href="fitmle.1.html">fitmle<span class="s">(1)</span></a>, <a class="man-ref" href="power_law.1.html">power_law<span class="s">(1)</span></a></p> +<p><span class="man-ref">deg_seq<span class="s">(1)</span></span>, <span class="man-ref">conf_model_deg<span class="s">(1)</span></span>, <span class="man-ref">fitmle<span class="s">(1)</span></span>, <span class="man-ref">power_law<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/dijkstra.1.html b/doc/dijkstra.1.html index 966a443..f1601c9 100644 --- a/doc/dijkstra.1.html +++ b/doc/dijkstra.1.html @@ -126,7 +126,7 @@ network).</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="shortest.1.html">shortest<span class="s">(1)</span></a></p> +<p><span class="man-ref">shortest<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/dms.1.html b/doc/dms.1.html index e51aa79..2831685 100644 --- a/doc/dms.1.html +++ b/doc/dms.1.html @@ -144,13 +144,13 @@ graph will be:</p> creates <var>m=3</var> new edges and the initial seed network is a ring of <var>n0=5</var> nodes. The degree distribution of the final graph will have exponent equal to <code>gamma = 3.0 + a/m = 3.0</code>. In this case, <code>dms</code> -produces a Barabasi-Albert graph (see <a class="man-ref" href="ba.1.html">ba<span class="s">(1)</span></a> for details). The edge +produces a Barabasi-Albert graph (see <span class="man-ref">ba<span class="s">(1)</span></span> for details). The edge list of the graph is saved in the file <code>dms_10000_3_5_0.txt</code> (thanks to the redirection operator <code>></code>).</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="ba.1.html">ba<span class="s">(1)</span></a>, <a class="man-ref" href="bb_fitness.1.html">bb_fitness<span class="s">(1)</span></a></p> +<p><span class="man-ref">ba<span class="s">(1)</span></span>, <span class="man-ref">bb_fitness<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/er_A.1.html b/doc/er_A.1.html index 93c9a11..57c40d9 100644 --- a/doc/er_A.1.html +++ b/doc/er_A.1.html @@ -124,7 +124,7 @@ file.</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="er_B.1.html">er_B<span class="s">(1)</span></a>, <a class="man-ref" href="ws.1.html">ws<span class="s">(1)</span></a></p> +<p><span class="man-ref">er_B<span class="s">(1)</span></span>, <span class="man-ref">ws<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/er_B.1.html b/doc/er_B.1.html index 4b7a963..0917b8f 100644 --- a/doc/er_B.1.html +++ b/doc/er_B.1.html @@ -124,7 +124,7 @@ redirect the output of the program to a file.</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="er_A.1.html">er_A<span class="s">(1)</span></a>, <a class="man-ref" href="ws.1.html">ws<span class="s">(1)</span></a></p> +<p><span class="man-ref">er_A<span class="s">(1)</span></span>, <span class="man-ref">ws<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/f3m.1.html b/doc/f3m.1.html index 3890394..21e6722 100644 --- a/doc/f3m.1.html +++ b/doc/f3m.1.html @@ -201,7 +201,7 @@ underrepresented, as made evident by value of the z-score (-3.338).</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="johnson_cycles.1.html">johnson_cycles<span class="s">(1)</span></a></p> +<p><span class="man-ref">johnson_cycles<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/fitmle.1.html b/doc/fitmle.1.html index 863099c..b99bc9f 100644 --- a/doc/fitmle.1.html +++ b/doc/fitmle.1.html @@ -186,7 +186,7 @@ and a much higher p-value:</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="deg_seq.1.html">deg_seq<span class="s">(1)</span></a>, <a class="man-ref" href="power_law.1.html">power_law<span class="s">(1)</span></a></p> +<p><span class="man-ref">deg_seq<span class="s">(1)</span></span>, <span class="man-ref">power_law<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/gn.1.html b/doc/gn.1.html index 0b1c476..319bf3c 100644 --- a/doc/gn.1.html +++ b/doc/gn.1.html @@ -169,7 +169,7 @@ file <code>karate_gn_trace</code>.</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="modularity.1.html">modularity<span class="s">(1)</span></a>, <a class="man-ref" href="cnm.1.html">cnm<span class="s">(1)</span></a>, <a class="man-ref" href="label_prop.1.html">label_prop<span class="s">(1)</span></a></p> +<p><span class="man-ref">modularity<span class="s">(1)</span></span>, <span class="man-ref">cnm<span class="s">(1)</span></span>, <span class="man-ref">label_prop<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/graph_info.1.html b/doc/graph_info.1.html index 5f41f36..5d452b4 100644 --- a/doc/graph_info.1.html +++ b/doc/graph_info.1.html @@ -109,7 +109,7 @@ is the average degree, and <code>avg_k2</code> is the average squared degree of <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="clust.1.html">clust<span class="s">(1)</span></a></p> +<p><span class="man-ref">clust<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/hv_net.1.html b/doc/hv_net.1.html index d01545c..7e6284e 100644 --- a/doc/hv_net.1.html +++ b/doc/hv_net.1.html @@ -131,7 +131,7 @@ the node in the sampled graph, in the format:</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="conf_model_deg.1.html">conf_model_deg<span class="s">(1)</span></a>, <a class="man-ref" href="conf_model_deg_nocheck.1.html">conf_model_deg_nocheck<span class="s">(1)</span></a></p> +<p><span class="man-ref">conf_model_deg<span class="s">(1)</span></span>, <span class="man-ref">conf_model_deg_nocheck<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/johnson_cycles.1.html b/doc/johnson_cycles.1.html index 225f95c..4194676 100644 --- a/doc/johnson_cycles.1.html +++ b/doc/johnson_cycles.1.html @@ -236,7 +236,7 @@ require exponentially more time.</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="f3m.1.html">f3m<span class="s">(1)</span></a>, <a class="man-ref" href="shortest.1.html">shortest<span class="s">(1)</span></a></p> +<p><span class="man-ref">f3m<span class="s">(1)</span></span>, <span class="man-ref">shortest<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/knn.1.html b/doc/knn.1.html index c8ea160..c85f043 100644 --- a/doc/knn.1.html +++ b/doc/knn.1.html @@ -212,7 +212,7 @@ knn(k) indicates the presence of assortative correlations.</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="knn_w.1.html">knn_w<span class="s">(1)</span></a>, <a class="man-ref" href="deg_seq.1.html">deg_seq<span class="s">(1)</span></a></p> +<p><span class="man-ref">knn_w<span class="s">(1)</span></span>, <span class="man-ref">deg_seq<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/knn_w.1.html b/doc/knn_w.1.html index 7f2a11d..af4cf7a 100644 --- a/doc/knn_w.1.html +++ b/doc/knn_w.1.html @@ -193,7 +193,7 @@ width by running:</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="knn.1.html">knn<span class="s">(1)</span></a>, <a class="man-ref" href="deg_seq.1.html">deg_seq<span class="s">(1)</span></a></p> +<p><span class="man-ref">knn<span class="s">(1)</span></span>, <span class="man-ref">deg_seq<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/kruskal.1.html b/doc/kruskal.1.html index c0aeece..179099c 100644 --- a/doc/kruskal.1.html +++ b/doc/kruskal.1.html @@ -149,7 +149,7 @@ second parameter:</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="clust_w.1.html">clust_w<span class="s">(1)</span></a>, <a class="man-ref" href="dijkstra.1.html">dijkstra<span class="s">(1)</span></a>, <a class="man-ref" href="largest_component.1.html">largest_component<span class="s">(1)</span></a></p> +<p><span class="man-ref">clust_w<span class="s">(1)</span></span>, <span class="man-ref">dijkstra<span class="s">(1)</span></span>, <span class="man-ref">largest_component<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/label_prop.1.html b/doc/label_prop.1.html index 1e0eb28..6b6ce89 100644 --- a/doc/label_prop.1.html +++ b/doc/label_prop.1.html @@ -164,7 +164,7 @@ flips at each epoch in the file <code>karate_label-prop_trace</code>.</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="modularity.1.html">modularity<span class="s">(1)</span></a>, <a class="man-ref" href="gn.1.html">gn<span class="s">(1)</span></a>, <a class="man-ref" href="cnm.1.html">cnm<span class="s">(1)</span></a></p> +<p><span class="man-ref">modularity<span class="s">(1)</span></span>, <span class="man-ref">gn<span class="s">(1)</span></span>, <span class="man-ref">cnm<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/largest_component.1.html b/doc/largest_component.1.html index 1d0af04..a8a7523 100644 --- a/doc/largest_component.1.html +++ b/doc/largest_component.1.html @@ -109,7 +109,7 @@ component of <var>graph_in</var>, in the format:</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="components.1.html">components<span class="s">(1)</span></a>, <a class="man-ref" href="node_components.1.html">node_components<span class="s">(1)</span></a>, <a class="man-ref" href="strong_conn.1.html">strong_conn<span class="s">(1)</span></a></p> +<p><span class="man-ref">components<span class="s">(1)</span></span>, <span class="man-ref">node_components<span class="s">(1)</span></span>, <span class="man-ref">strong_conn<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/node_components.1.html b/doc/node_components.1.html index cdbf09b..d528de7 100644 --- a/doc/node_components.1.html +++ b/doc/node_components.1.html @@ -180,7 +180,7 @@ parameter. IN this case, it is better to save the output of <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="components.1.html">components<span class="s">(1)</span></a>, <a class="man-ref" href="strong_conn.1.html">strong_conn<span class="s">(1)</span></a>, <a class="man-ref" href="largest_component.1.html">largest_component<span class="s">(1)</span></a></p> +<p><span class="man-ref">components<span class="s">(1)</span></span>, <span class="man-ref">strong_conn<span class="s">(1)</span></span>, <span class="man-ref">largest_component<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/power_law.1.html b/doc/power_law.1.html index 7ebae1c..1fdba1e 100644 --- a/doc/power_law.1.html +++ b/doc/power_law.1.html @@ -187,7 +187,7 @@ with an odd sum, which thus cannot correspond to a valid degree sequence.</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="deg_seq.1.html">deg_seq<span class="s">(1)</span></a>, <a class="man-ref" href="conf_model_deg.1.html">conf_model_deg<span class="s">(1)</span></a>, <a class="man-ref" href="conf_model_deg_nocheck.1.html">conf_model_deg_nocheck<span class="s">(1)</span></a></p> +<p><span class="man-ref">deg_seq<span class="s">(1)</span></span>, <span class="man-ref">conf_model_deg<span class="s">(1)</span></span>, <span class="man-ref">conf_model_deg_nocheck<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/shortest.1.html b/doc/shortest.1.html index df962b0..d9bedd2 100644 --- a/doc/shortest.1.html +++ b/doc/shortest.1.html @@ -147,7 +147,7 @@ paths will be written to the file <code>er_1000_5000.net_25_paths</code>.</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="dijkstra.1.html">dijkstra<span class="s">(1)</span></a>, <a class="man-ref" href="bet_dependency.1.html">bet_dependency<span class="s">(1)</span></a>, <a class="man-ref" href="betweenness.1.html">betweenness<span class="s">(1)</span></a>, <a class="man-ref" href="shortest_avg_max_hist.1.html">shortest_avg_max_hist<span class="s">(1)</span></a></p> +<p><span class="man-ref">dijkstra<span class="s">(1)</span></span>, <span class="man-ref">bet_dependency<span class="s">(1)</span></span>, <span class="man-ref">betweenness<span class="s">(1)</span></span>, <span class="man-ref">shortest_avg_max_hist<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/shortest_avg_max_hist.1 b/doc/shortest_avg_max_hist.1 index 8bb8653..34642b0 100644 --- a/doc/shortest_avg_max_hist.1 +++ b/doc/shortest_avg_max_hist.1 @@ -10,7 +10,7 @@ \fBshortest_avg_max_hist\fR \fIgraph_in\fR \fInode\fR . .SH "DESCRIPTION" -\fBshortest_avg_max_hist\fR computes the distance (and the shortest paths) between a given node and all the other nodes of an undirected graph provided as input\. The program implements the Breadth\-First Search algorithm, and works almost exactly as shortest(1) \fIshortest\.1\.html\fR, except for the output\. +\fBshortest_avg_max_hist\fR computes the distance (and the shortest paths) between a given node and all the other nodes of an undirected graph provided as input\. The program implements the Breadth\-First Search algorithm, and works almost exactly as [shortest(1)][], except for the output\. . .SH "PARAMETERS" . diff --git a/doc/shortest_avg_max_hist.1.html b/doc/shortest_avg_max_hist.1.html index 8169b7c..2b94e33 100644 --- a/doc/shortest_avg_max_hist.1.html +++ b/doc/shortest_avg_max_hist.1.html @@ -90,7 +90,7 @@ <p><code>shortest_avg_max_hist</code> computes the distance (and the shortest paths) between a given node and all the other nodes of an undirected graph provided as input. The program implements the Breadth-First Search -algorithm, and works almost exactly as <a href="shortest.1.html">shortest(1)</a>, except for the +algorithm, and works almost exactly as [<span class="man-ref">shortest<span class="s">(1)</span></span>][], except for the output.</p> <h2 id="PARAMETERS">PARAMETERS</h2> @@ -122,7 +122,7 @@ nodes in the graph (<code>3.2002</code>), the eccentricity of node <code>25</cod <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="shortest.1.html">shortest<span class="s">(1)</span></a>, <a class="man-ref" href="betweenness.1.html">betweenness<span class="s">(1)</span></a>, <a class="man-ref" href="bet_dependency.1.html">bet_dependency<span class="s">(1)</span></a></p> +<p><span class="man-ref">shortest<span class="s">(1)</span></span>, <span class="man-ref">betweenness<span class="s">(1)</span></span>, <span class="man-ref">bet_dependency<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/strong_conn.1.html b/doc/strong_conn.1.html index 4b4e0af..f76a467 100644 --- a/doc/strong_conn.1.html +++ b/doc/strong_conn.1.html @@ -169,7 +169,7 @@ using:</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="components.1.html">components<span class="s">(1)</span></a>, <a class="man-ref" href="node_components.1.html">node_components<span class="s">(1)</span></a>, <a class="man-ref" href="largest_component.1.html">largest_component<span class="s">(1)</span></a></p> +<p><span class="man-ref">components<span class="s">(1)</span></span>, <span class="man-ref">node_components<span class="s">(1)</span></span>, <span class="man-ref">largest_component<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> diff --git a/doc/ws.1.html b/doc/ws.1.html index c3ff511..3a71d5b 100644 --- a/doc/ws.1.html +++ b/doc/ws.1.html @@ -145,7 +145,7 @@ edges, since <code>SHOW</code> was specified as a fourth parameter.</p> <h2 id="SEE-ALSO">SEE ALSO</h2> -<p><a class="man-ref" href="er_A.1.html">er_A<span class="s">(1)</span></a>, <a class="man-ref" href="er_B.1.html">er_B<span class="s">(1)</span></a></p> +<p><span class="man-ref">er_A<span class="s">(1)</span></span>, <span class="man-ref">er_B<span class="s">(1)</span></span></p> <h2 id="REFERENCES">REFERENCES</h2> |