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authorKatolaZ <katolaz@freaknet.org>2017-09-27 15:06:31 +0100
committerKatolaZ <katolaz@freaknet.org>2017-09-27 15:06:31 +0100
commit3aee2fd43e3059a699af2b63c6f2395e5a55e515 (patch)
tree58c95505a0906ed9cfa694f9dbd319403fd8f01d /src/dms
First commit on github -- NetBunch 1.0
Diffstat (limited to 'src/dms')
-rw-r--r--src/dms/Makefile.am4
-rw-r--r--src/dms/Makefile.in582
-rw-r--r--src/dms/dms.c211
3 files changed, 797 insertions, 0 deletions
diff --git a/src/dms/Makefile.am b/src/dms/Makefile.am
new file mode 100644
index 0000000..935680c
--- /dev/null
+++ b/src/dms/Makefile.am
@@ -0,0 +1,4 @@
+include ../common.mk
+bin_PROGRAMS = dms
+dms_SOURCES = dms.c ../utils/utils.c ../utils/cum_distr.c ../include/utils.h ../include/cum_distr.h
+dms_LDADD = -lm
diff --git a/src/dms/Makefile.in b/src/dms/Makefile.in
new file mode 100644
index 0000000..046e4c8
--- /dev/null
+++ b/src/dms/Makefile.in
@@ -0,0 +1,582 @@
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+# Copyright (C) 1994-2014 Free Software Foundation, Inc.
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+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
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+ -rm -rf ../utils/$(DEPDIR) ./$(DEPDIR)
+ -rm -f Makefile
+distclean-am: clean-am distclean-compile distclean-generic \
+ distclean-tags
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+html-am:
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-dvi-am:
+
+install-exec-am: install-binPROGRAMS
+
+install-html: install-html-am
+
+install-html-am:
+
+install-info: install-info-am
+
+install-info-am:
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-pdf-am:
+
+install-ps: install-ps-am
+
+install-ps-am:
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+ -rm -rf ../utils/$(DEPDIR) ./$(DEPDIR)
+ -rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-compile mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binPROGRAMS
+
+.MAKE: install-am install-strip
+
+.PHONY: CTAGS GTAGS TAGS all all-am check check-am clean \
+ clean-binPROGRAMS clean-generic cscopelist-am ctags ctags-am \
+ distclean distclean-compile distclean-generic distclean-tags \
+ distdir dvi dvi-am html html-am info info-am install \
+ install-am install-binPROGRAMS install-data install-data-am \
+ install-dvi install-dvi-am install-exec install-exec-am \
+ install-html install-html-am install-info install-info-am \
+ install-man install-pdf install-pdf-am install-ps \
+ install-ps-am install-strip installcheck installcheck-am \
+ installdirs maintainer-clean maintainer-clean-generic \
+ mostlyclean mostlyclean-compile mostlyclean-generic pdf pdf-am \
+ ps ps-am tags tags-am uninstall uninstall-am \
+ uninstall-binPROGRAMS
+
+.PRECIOUS: Makefile
+
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/src/dms/dms.c b/src/dms/dms.c
new file mode 100644
index 0000000..da3ab63
--- /dev/null
+++ b/src/dms/dms.c
@@ -0,0 +1,211 @@
+/**
+ * This program is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License as
+ * published by the Free Software Foundation, either version 3 of the
+ * License, or (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ * General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see
+ * <http://www.gnu.org/licenses/>.
+ *
+ * (c) Vincenzo Nicosia 2009-2017 -- <v.nicosia@qmul.ac.uk>
+ *
+ * This file is part of NetBunch, a package for complex network
+ * analysis and modelling. For more information please visit:
+ *
+ * http://www.complex-networks.net/
+ *
+ * If you use this software, please add a reference to
+ *
+ * V. Latora, V. Nicosia, G. Russo
+ * "Complex Networks: Principles, Methods and Applications"
+ * Cambridge University Press (2017)
+ * ISBN: 9781107103184
+ *
+ ***********************************************************************
+ *
+ * This program implements the Dorogovtsev-Samukhin-Mendes preferential
+ * attachment, where the attachment probability is:
+ *
+ * \Pi_{i->j} \propto k_j + a
+ *
+ * Here a > -m is a tunable parameter. The resulting network has a
+ * powerlaw degree distribution with exponent:
+ *
+ * \gamma = 3 + a/m
+ *
+ * References:
+ *
+ * [1] S. N. Dorogovtsev, J. F. F. Mendes, A. N. Samukhin. "Structure
+ * of Growing Networks with Preferential Linking".
+ * Phys. Rev. Lett. 85 (2000), 4633-4636.
+ *
+ */
+
+
+#include <stdio.h>
+#include <stdlib.h>
+#include <time.h>
+
+#include "cum_distr.h"
+
+
+void usage(char *argv[]){
+ printf("********************************************************************\n"
+ "** **\n"
+ "** -*- dms -*- **\n"
+ "** **\n"
+ "** Grow a scale-free network of 'N' nodes using the modified **\n"
+ "** linear preferential attachment model proposed by **\n"
+ "** Dorogovtsev-Mendes-Samukhin. **\n"
+ "** **\n"
+ "** The initial network is a clique of 'n0' nodes, and each new **\n"
+ "** node creates 'm' edges. The attachment probability is of **\n"
+ "** the form: **\n"
+ "** **\n"
+ "** P(i->j) ~ k_j + a **\n"
+ "** **\n"
+ "** where a > -m is the fourth parameter. The resulting **\n"
+ "** network will have a power-law degree distribution with **\n"
+ "** exponent **\n"
+ "** **\n"
+ "** gamma = 3 + a/m **\n"
+ "** **\n"
+ "** The program prints on STDOUT the edge-list of the final **\n"
+ "** graph. **\n"
+ "** **\n"
+ "********************************************************************\n"
+ " This is Free Software - You can use and distribute it under \n"
+ " the terms of the GNU General Public License, version 3 or later\n\n"
+ " (c) Vincenzo Nicosia 2009-2017 (v.nicosia@qmul.ac.uk)\n\n"
+ "********************************************************************\n\n"
+ );
+ printf("Usage: %s <N> <m> <n0> <a>\n", argv[0]);
+
+}
+
+
+
+int init_network(unsigned int *I, unsigned int *J, int n0,
+ double a, cum_distr_t *d){
+
+ unsigned int n, i, S_num;
+
+ S_num = 0;
+ for(n=0; n<n0; n++){
+ for(i=n+1; i<n0; i++){
+ I[S_num] = n;
+ J[S_num] = i % n0;
+ S_num += 1;
+ }
+ cum_distr_add(d, n, n0+a);
+ }
+ return S_num;
+}
+
+int already_neighbour(unsigned int *J, int S_num, int j, int dest){
+
+ int i;
+
+ for(i=S_num; i< S_num + j; i ++){
+ if (J[i] == dest)
+ return 1;
+ }
+ return 0;
+}
+
+
+
+int dms(unsigned int *I, unsigned int *J, unsigned int N,
+ unsigned int m, unsigned int n0, double a){
+
+ cum_distr_t *d = NULL;
+ unsigned int n, j, dest, S_num;
+
+ d = cum_distr_init(N * m);
+
+ S_num = init_network(I, J, n0, a, d);
+
+
+ n = n0;
+ while (n<N){
+ for(j=0; j<m; j++){
+ I[S_num+j] = n;
+ dest = cum_distr_sample(d);
+ while(already_neighbour(J, S_num, j, dest)){
+ dest = cum_distr_sample(d);
+ }
+ J[S_num + j] = dest;
+ }
+ cum_distr_add(d, n, m + a);
+ for (j=0; j<m; j++){
+ cum_distr_add(d, J[S_num + j], 1);
+ }
+ S_num += m;
+ n += 1;
+ }
+ cum_distr_destroy(d);
+ return S_num;
+}
+
+
+
+int main(int argc, char *argv[]){
+
+ int N, m, n0, K, i;
+ unsigned int *I, *J;
+ double a;
+
+ if (argc < 5){
+ usage(argv);
+ exit(1);
+ }
+
+ N = atoi(argv[1]);
+ m = atoi(argv[2]);
+ n0 = atoi(argv[3]);
+ a = atof(argv[4]);
+
+ srand(time(NULL));
+
+ if (N < 1){
+ fprintf(stderr, "N must be positive\n");
+ exit(1);
+ }
+ if(m > n0){
+ fprintf(stderr, "n0 cannot be smaller than m\n");
+ exit(1);
+
+ }
+ if (n0<1){
+ fprintf(stderr, "n0 must be positive\n");
+ exit(1);
+ }
+
+ if (m < 1){
+ fprintf(stderr, "m must be positive\n");
+ exit(1);
+ }
+
+ if (a < -m){
+ fprintf(stderr, "a must be larger than -m\n");
+ exit(1);
+ }
+
+
+ I = malloc(N * m * sizeof(unsigned int));
+ J = malloc(N * m * sizeof(unsigned int));
+
+ K = dms(I, J, N, m, n0, a);
+
+ for(i=0; i<K; i++){
+ printf("%d %d\n", J[i], I[i]);
+ }
+ free(I);
+ free(J);
+}