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authorKatolaZ <katolaz@yahoo.it>2015-10-19 16:23:00 +0100
committerKatolaZ <katolaz@yahoo.it>2015-10-19 16:23:00 +0100
commitdf8386f75b0538075d72d52693836bb8878f505b (patch)
tree704c2a0836f8b9fd9f470c12b6ae05637c431468 /structure/activity/hamming_dist.py
parent363274e79eade464247089c105260bc34940da07 (diff)
First commit of MAMMULT code
Diffstat (limited to 'structure/activity/hamming_dist.py')
-rw-r--r--structure/activity/hamming_dist.py41
1 files changed, 41 insertions, 0 deletions
diff --git a/structure/activity/hamming_dist.py b/structure/activity/hamming_dist.py
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+++ b/structure/activity/hamming_dist.py
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+####
+##
+## Take as input the layers of a multiplex, and provide as output a
+## file where the n-th line contains the activity of the n-th
+## layer.
+##
+##
+
+
+import sys
+
+if len(sys.argv) < 3:
+ print "Usage: %s <layer1> <layer2> [<layer3>...]" % sys.argv[0]
+ sys.exit(1)
+
+max_N = -1
+
+layers = []
+
+
+for layer in sys.argv[1:]:
+ active = []
+ with open(layer, "r") as lines:
+ for l in lines:
+ if l[0] == "#":
+ continue
+
+ s, d = [int(x) for x in l.strip(" \n").split(" ")[:2]]
+ if s > max_N:
+ max_N = s
+ if d > max_N:
+ max_N = d
+ active.extend([s,d])
+ active = set(active)
+ layers.append(active)
+
+for i in range(len(layers)):
+ for j in range(i+1, len(layers)):
+ s = layer[i] ^ layer[j]
+ print i, j, len(s)*1.0 / min(len(layer[i]) + len(layer[j]), max_N+1)
+